Biosensor Fluorescent Protein Literature Sources

Literature Sources

• Abad, M. F. C., DiBenedetto, G., Magalhães, P. J., Filippin, L., and Pozzan, T., Mitochondrial pH monitored by a new engineered green fluorescent protein mutant., Journal of Biological Chemistry 279: 11521-11529 (2004). | PubMed |
• Abedi, M. R., Caponigro, G., and Kamb, A., Green fluorescent protein as a scaffold for intracellular presentation of peptides., Nucleic Acids Research 26: 623-630 (1998).
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• Allen, G. J., Chu, S. P., Schumacher, K., Shimazaki, C. T., Vafeados, D., Kemper, A., Hawke, S. D., Tallman, G., Tsien, R. Y., Harper, J. F., Chory, J., and Schroeder, J. I., Alteration of stimulus-specific guard cell calcium oscillations and stomatal closing in Arabidopsis det3 mutant., Science 289: 2338-2342 (2000). | PubMed |
• Allen, G. J., Kwak, J. M., Chu, S. P., Llopis, J., Tsien, R. Y., Harper, J. F., and Schroeder, J. I., Cameleon C\calcium indicator reports cytoplasmic calcium dynamics in Arabidopsis guard cells., The Plant Journal 19: 735-747 (1999). | PubMed |
• Ataka, K. and Pieribone, V. A., A genetically targetable fluorescent probe of channel gating with rapid kinetics., Biophysical Journal 82: 509-516 (2002). | PubMed |
• Awais, M., Sato, M., Sasaki, K., and Umezawa, Y., A genetically encoded fluorescent indicator capable of discriminating estrogen agonists from antagonists in living cells., Analytical Chemistry 76: 2181-2186 (2004). | Anal Chem |
• Baird, G. S., Zacharias, D. A., and Tsien, R. Y., Biochemistry, mutagenesis, and oligomerization of DsRed, a red fluorescent protein from coral., Proceedings of the National Academy of Sciences (USA) 97: 11984-11989 (2000). | PubMed |
• Barondeau, D. P., Kassman, C. J., Tainer, J. A., and Getzoff, E. D., Structural chemistry of a green fluorescent protein zinc biosensor., Journal of the American Chemical Society 124: 3522-3524 (2002). | PubMed |
• Bartlett, P. J., Young, K. W., Nahorski, S. R., and Challiss, R. A. J., Single cell analysis and temporal profiling of agonist-mediated inositol 1,4,5-trisphosphate, Ca2+, diacylglycerol, and protein kinase C signaling using fluorescent biosensors., The Journal of Biological Chemistry 280: 21837-21846 (2005). | PubMed |
• Bastiaens, P. I. H. and Pepperkok, R., Observing proteins in their natural habitat: The living cell., Trends in Biochemical Sciences 25: 631-637 (2000). | PubMed |
• Berridge, M. J., Lipp, P., and Bootman, M. D., The versatility and universality of calcium signaling., Nature Reviews Molecular Cell Biology 1: 11-21 (2000). | PubMed |
• Billinton, N., Barker, M. G., Michel, C. E., Knight, A. W., Heyer, W. D., Goddard, N. J., Fielden, P. R., and Walmsley, R. M., Development of a green fluorescent protein reporter for a yeast genotoxicity biosensor., Biosensors and Bioelectronics 13: 831-838 (1998).
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• Biondi, R. M., Baehler, P. J., Reymond, C. D., and Véron, M., Random insertion of GFP into the cAMP-dependent protein kinase regulatory subunit from Dictyostelium discoideum., Nucleic Acids Research 26: 4946-4952 (1998). | PubMed |
• Bozza, T., McGann, J. P., Mombaerts, P., and Wachowiak, M., In vivo imaging of neuronal activity by targeted expression of a genetically encoded probe in the mouse., Neuron 42: 9-21 (2004). | PubMed |
• Bracha-Drori, K., Shichrur, K., Katz, A., Oliva, M., Angelovici, R., Yalovsky, S., and Ohad, N., Detection of protein-protein interactions in plants using bimolecular fluorescence complementation., The Plant Journal 40: 419-427 (2004). | PubMed |
• Bünemann, M., Frank, M., and Lohse, M. J., Gi protein activation in intact cells involves subunit rearrangement rather than dissociation., Proceedings of the National Academy of Sciences (USA) 100: 16077-16082 (2003). | PubMed |
• Cannon, M. B. and Remington, S. J., Re-engineering redox-sensitive green fluorescent protein for improved response rate., Protein Science 15: 45-57 (2006). | PubMed |
• Chan, F. K. M., Siegel, R. M., Zacharias, D., Swofford, R., Holmes, K. L., Tsien, R. Y., and Lenardo, M. J., Fluorescence resonance energy transfer analysis of cell surface receptor interactions and signaling using spectral variants of the green fluorescent protein., Cytometry 44: 361-368 (2001). | PubMed |
• Chiang, J. J. H. and Truong, K., Using co-cultures expressing fluorescence resonance energy transfer based protein biosensors to simultaneously image caspase-3 and calcium signaling., Biotechnology Letters 27: 1219-1227 (2005). | PubMed |
• Chiu, V. K., Bivona, T., Hach, A., Sajous, J. B., Silletti, J., Wiener, H., Johnson, R. L., Coxt, A. D., and Phillips, M. R., Ras signaling on the endoplasmic reticulum and the golgi., Nature Cell Biology 4: 343-350 (2002). | PubMed |
• Demaurex, N. and Frieden, M., Measurements of the free luminal ER calcium concentration with targeted "cameleon" fluorescent proteins., Cell Calcium 34: 109-119 (2003). | PubMed |
• DiPilato, L. M., Cheng, X., and Zhang, J., Fluorescent indicators of cAMP and Epac activation reveals differential dynamics of cAMP signaling within discrete subcellular compartments., Proceedings of the National Academy of Sciences (USA) 101: 16513-16518 (2004). | PubMed |
• Dooley, C. T., Dore, T. M., Hanson, G. T., Jackson, W. C., Remington, S. J., and Tsien, R. Y., Imaging dynamic redox changes in mammalian cells with green fluorescent protein indicators., Journal of Biological Chemistry 279: 22284-22293 (2004). | PubMed |
• Emmanouilidou, E., Teschemacher, A. G., Pouli, A. E., Nicholls, L. I., Seward, E. P., and Rutter, G. A., Imaging calcium concentration changes at the secretory vesicle surface with a recombinant targeted cameleon., Current Biology 9: 915-918 (1999). | PubMed |
• Erickson, M. G., Alseikhan, B. A., Peterson, B. Z., and Yue, D. T., Preassociation of calmodulin with voltage-gated calcium channels revealed by FRET in single living cells., Neuron 31: 973-985 (2001). | PubMed |
• Fan, G. Y., Fujisaki, H., Miyawaki, A., Tsay, R. K., Tsien, R. Y., and Ellisman, M. H., Video-rate scanning two-photon excitation fluorescence microscopy and ratio imaging with cameleons., Biophysical Journal 76: 2412-2420 (1999). | PubMed |
• Fehr, M., Frommer, W. B., and Lalonde, S., Visualization of maltose uptake in living yeast cells by fluorescent nanosensors., Proceedings of the National Academy of Sciences (USA) 99: 9846-9851 (2002). | PubMed |
• Fehr, M., Lalonde, S., Lager, I., Wolff, M. W., and Frommer, W. B., In vivo imaging of the dynamics of glucose uptake in the cytosol of COS-7 cells by fluorescent nanosensors., The Journal of Biological Chemistry 278: 19127-19133 (2003). | PubMed |
• Fehr, M., Okumoto, S., Deuschle, K., Lager, I., Looger, L. L., Persson, J., Kozhuhk, L., Lalonde, S., and Frommer, W. B., Development and use of fluorescent nanosensors for metabolite imaging in living cells., Biochemical Society Transactions 33: 287-290 (2005). | PubMed |
• Fiala, A., Spall, T., Diegelmann, S., Eisermann, B., Sachse, S., Devaud, J. M., Buchner, E., and Galizia, C. G., Genetically expressed cameleon in Drosophila melanogaster is used to visualize olfactory information in projection neurons., Current Biology 12: 1877-1884 (2002). | PubMed |
• Filippin, L., Abad, M. C., Gastaldello, S., Magalhães, P. J., Sandonà, D., and Pozzan, T., Improved strategies for the delivery of GFP-based calcium sensors into the mitochondrial matrix., Cell Calcium 37: 129-136 (2005). | PubMed |
• Filippin, L., Magalhães, P. J., Di Benedetto, G., Colella, M., and Pozzan, T., Stable interactions between mitochondria and endoplasmic reticulum allow rapid accumulation of calcium in a subpopulation of mitochondria., Journal of Biological Chemistry 278: 39224-39234 (2003). | PubMed |
• Foyouzi-Youssefi, R., Arnaudeau, S., Borner, C., Kelley, W. L., Tschopp, J., Lew, D. P., Demaurex, N., and Krause, K. H., Bcl-2 decreases the free calcium concentration within the endoplasmic reticulum., Proceedings of the National Academy of Sciences (USA) 97: 5723-5728 (2000). | PubMed |
• Gaietta, G., Deerinck, T. J., Adams, S. R., Bouwer, J., Tour, O., Laird, D. W., Sosinsky, G. E., Tsien, R. Y., and Ellisman, M. H., Multicolor and electron microscopic imaging of connexin trafficking., Science 296: 503-507 (2002). | PubMed |
• Gaits, F. and Hahn, K., Shedding Light on Cell Signaling: Interpretation of FRET biosensors., Science Stke 165: 1-5 (2003). | PubMed |
• Goodwin, J. S., Drake, K. R., Remmert, C. L., and Kenworthy, A. K., Ras diffusion is sensitive to plasma membrane viscosity., Biophysical Journal 89: 1398-1410 (2005).
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• Gorokhovatsky, A. Y., Marchenkov, V. V., Rudenko, N. V., Ivashina, T. V., Ksenzenko, V. N., Burkhardt, N., Semisotnov, G. V., Vinokurov, L. M., and Alakhov, Y. B., Fusion of Aequorea victoria GFP and aequorin provides their calcium-induced interaction that results in red shift of GFP absorption and efficient bioluminescence energy transfer., Biochemical and Biophysical Research Communications 320: 703-711 (2004). | PubMed |
• Griesbeck, O., Fluorescent proteins as sensors for cellular functions., Current Opinion in Neurobiology 14: 636-641 (2004). | PubMed |
• Griesbeck, O., Baird, G. S., Campbell, R. E., Zacharias, D. A., and Tsien, R. Y., Reducing the environmental sensitivity of yellow fluorescent protein., Journal of Biological Chemistry 276: 29188-29194 (2001). | PubMed |
• Guerrero, G. and Isacoff, E. Y., Genetically encoded optical sensors of neuronal activity and cellular function., Current Opinion in Neurobiology 11: 601-607 (2001). | PubMed |
• Guerrero, G., Siegel, M. S., Roska, B., Loots, E., and Isacoff, E. Y., Tuning FlaSh: Redesign of the dynamics, voltage range, and color of the genetically encoded optical sensor of membrane potential., Biophysical Journal 83: 3607-3618 (2002). | PubMed |
• Habuchi, S., Cotlet, M., Hofkens, J., Dirix, G., Michiels, J., Vanderleyden, J., Subramaniam, V., and De Schryver, F. C., Resonance energy transfer in a calcium concentration-dependent cameleon protein., Biophysical Journal 83: 3499-3506 (2002). | PubMed |
• Han, W., Li, D., and Levitan, E. S., A new green fluorescent protein construct for localizing and quantifying peptide release., Annals New York Academy of Sciences 971: 627-633 (2002). | PubMed |
• Hanson, G. T., Aggeler, R.., Oglesbee, D., Cannon, M., Capaldi, R. A., Tsien, R. Y., and Remington, S. J., Investigating mitochondrial redox potential with redox-sensitive green fluorescent protein indicators., Journal of Biological Chemistry 279: 13044-13053 (2004). | PubMed |
• Hanson, G. T., McAnaney, T. B., Park, E. S., Rendell, M. E. P., Yarbrough, D. K., Chu, S., Xi, L., Boxer, S. G., Montrose, M. H., and Remington, S. J., Green fluorescent protein variants as ratiometric dual emission pH sensors. 1. Structural characterization and preliminary application., Biochemistry 41: 15477-15488 (2002). | PubMed |
• Harpur, A. G., Wouters, F. S., and Bastiaens, P. I. H., Imaging FRET between spectrally similar GFP molecules in single cells., Nature Biotechnology 19: 167-169 (2001).
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• Hasan, M. T., Friedrich, R. W., Euler, T., Larkum, M. E., Giese, G., Both, M., Duebel, J., Waters, J., Bujard, H., Griesbeck, O., Tsien, R. Y., Nagai, T., Miyawaki, A., and Denk, W., Functional fluorescent calcium indicator proteins in transgenic mice under TET control., PLoS Biology 2: 0763-0775 (2004). | PubMed |
• He, L., Wu, X., Meylan, F., Olson, D. P., Simone, J., Hewgill, D., Siegel, R., and Lipsky, P. E., Monitoring caspase activity in living cells using fluorescent proteins and flow cytometry., American Journal of Pathology 164: 1901-1913 (2004). | PubMed |
• Heim, N. and Griesbeck, O., Genetically encoded indicators of cellular calcium dynamics based on troponin C and green fluorescent protein., Journal of Biological Chemistry 279: 14280-14286 (2004). | PubMed |
• Heim, R., Green fluorescent protein forms for energy transfer., Methods in Enzymology 302: 408-423 (1999). | PubMed |
• Heim, R. and Tsien, R. Y., Engineering green fluorescent protein for improved brightness, longer wavelengths and fluorescence resonance energy transfer., Current Biology 6: 178-182 (1996). | PubMed |
• Heinemann, U. and Hahn, M., Circular permutation of polypeptide chains: Implications for protein folding and stability., Progress in Biophysics and Molecular Biology. 64: 121-143 (1995). | PubMed |
• Higashijima, S., Masino, M. A., Mandel, G, and Fetcho, J. R., Imaging neuronal activity during zebrafish behavior with a genetically encoded calcium indicator., Journal of Neurophysiology 90: 3986-3997 (2003). | PubMed |
• Hoffmann, C., Gaietta, G., Bünemann, M., Adams, S. R., Oberdorff-Maass, S., Behr, B., Vilardaga, J. P., Tsien, R. Y., Ellisman, M. H., and Lohse, M. J., A FlAsH-based FRET approach to determine G protein-coupled receptor activation in living cells., Nature Methods 2: 171-176 (2005). | PubMed |
• Hofmann, A., Iwai, H., Hess, S., Pluckthun, A., and Wlodawer, A., Structure of cyclized green fluorescent protein., Acta Crystallographica D58: 1400-1406 (2002). | PubMed |
• Honda, A., Adams, S. R., Sawyer, C. L., Lev-Ram, V., Tsien, R. Y., and Dostmann, W. R. G., Spatiotemporal dynamics of guanosine 3',5'-cyclic monophosphate revealed by a genetically encoded, fluorescent indicator., Proceedings of the National Academy of Sciences (USA) 98: 2437-2442 (2001). | PubMed |
• Hu, C. D., Chinenov, Y., and Kerppola, T. K., Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation., Molecular Cell 9: 789-798 (2002). | PubMed |
• Hu, C. D. and Kerppola, T. K., Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis., Nature Biotechnology 21: 539-545 (2003). | PubMed |
• Ikeda, M., Sugiyama, T., Wallace, C. S., Gompf, H. S., Yoshioka, T., Miyawaki, A., and Allen, C. N., Circadian dynamics of cytosolic and nuclear calcium in single suprachiasmatic nucleus neurons., Neuron 38: 253-263 (2003). | PubMed |
• Isshiki, M., Ying, Y. S., Fujita, T., and Anderson, R. G. W., A molecular sensor detects signal transduction from caveolae in living cells., The Journal of Biological Chemistry 277: 43389-43398 (2002). | PubMed |
• Jaconi, M., Bony, C., Richards, S. M., Terzic, A., Arnaudeau, S., Vassort, G., and Pucéat, M., Inositol 1,4,5-triphosphate directs calcium flow between mitochondria and the endoplasmic/sarcoplasmic reticulum: A role in regulating cardiac autonomic calcium spiking., Molecular Biology of the Cell 11: 1845-1858 (2000). | PubMed |
• Janetopoulos, C. and Devreotes, P., Monitoring receptor-mediated activation of heterotrimeric G-proteins by fluorescence resonance energy transfer., Methods 27: 366-373 (2002). | PubMed |
• Janetopoulos, C., Jin, T., and Devreotes, P., Receptor-mediated activation of heterotrimeric G-proteins in living cells., Science 291: 2408-2411 (2001). | PubMed |
• Jayaraman, S., Haggie, P., Wachter, R. M., Remington, S. J., and Verkman, A. S., Mechanism and cellular applications of a green fluorescent protein-based halide sensor., Journal of Biological Chemistry 275: 6047-6050 (2000). | PubMed |
• Jensen, K. K., Martini, L., and Schwartz, T. W., Enhanced fluorescence resonance energy transfer between spectral variants of green fluorescent protein through zinc-site engineering., Biochemistry 40: 938-945 (2001). | PubMed |
• Ji, G., Feldman, M. E., Deng, K. Y., Greene, K. S., Wilson, J., Lee, J. C., Johnston, R. C., Rishniw, M., Tallini, Y., Zhang, J., Wier, W. G., Blaustein, M. P., Xin, H. B., Nakai, J., and Kotlikoff, M. I., Calcium-sensing transgenic mice: Post-synaptic signaling in smooth muscle.., Journal of Biological Chemistry 279: 21461-21468 (2004). | PubMed |
• Jones, J., Heim, R., Hare, E., Stack, J., and Pollok, B. A., Development and application of a GFP-FRET intracellular caspase assay for drug screening., Journal of Biomolecular Screening 5: 307-317 (2000). | PubMed |
• Jones, J. T., Myers, J. W., Ferrell, J. E., Jr., and Meyer, T., Probing the precision of the mitotic clock with a live-cell fluorescent biosensor., Nature Biotechnology 22: 306-312 (2004). | PubMed |
• Kaganman, I., DNA makes GFP shine., Nature Methods 2: 644 (2005). | PubMed |
• Kaihara, A., Kawai, Y., Sato, M., Ozawa, T., and Umezawa, Y., Locating a protein-protein interaction in living cells via Renilla luciferase complementation., Analytical Chemistry 75: 4176-4181 (2003). | Anal Chem |
• Kawai, H., Suzuki, T., Kobayashi, T., Mizuguchi, H., Hayakawa, T., and Kawanishi, T., Simultaneous imaging of initiator/effector caspase activity and mitochondrial membrane potential during cell death in living HeLa cells., Biochimica et Biophysica Acta 1693: 101-110 (2004). | PubMed |
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• Kurokawa, K., Mochizuki, N., Ohba, Y., Mizuno, H., Miyawaki, A., and Matsuda, M., A pair of fluorescent resonance energy transfer-based probes for tyrosine phosphorylation of the CrkII adaptor protein in vivo., The Journal of Biological Chemistry 276: 31305-31310 (2001). | PubMed |
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